Problem processing a payment

[mkbr1]

Gnucash 2.2.9

Greetings all.
 
While reconciling my bank account I came across the following. 

The bank statement shows a payment of $xx. I find the invoice in my Gnucash
Data File, but no payment is recorded. I proceed to record the payment. I
search for the invoice with Ctr - F, then searching on value $xx, I am able
to bring up the invoice. Selecting the option to view the invoice, I can see
yes this the one. When selecting "process payment" I get the payment
information window showing all details - but not the $xx figure. It is about
half the amount. 

When I search for the invoice it shows one figure while this shows another.
Could this be something to do with a setting that splits a payment ? When I
go ahead and process this payment and look at the transaction in its
respective account it shows the correct total and two figures - one below
the other, that make up the total $xx

Any ideas on what may be happening here ?
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